#geneName	name	chrom	strand	txStart	txEnd	cdsStart	cdsEnd	exonCount	exonStarts	exonEnds
LMP-2A	K15	chrEBV(B_95_8_Raji_108401to171823_1to108400)	1	57640	69279	57703	65103	9	57640,63481,63783,63963,64294,64449,64703,64997,68831,	58058,63695,63881,64211,64374,64619,64918,65105,69279,
LMP-2B	LMP-2B	chrEBV(B_95_8_Raji_108401to171823_1to108400)	1	60894	69278	63482	65102	9	60894,63481,63783,63963,64294,64449,64703,64997,68831,	61048,63695,63881,64211,64374,64619,64918,65105,69279,
BBLF1	ORF38	chrEBV(B_95_8_Raji_108401to171823_1to108400)	0	59	643	59	286	1	59,	643,
BGLF5	ORF37	chrEBV(B_95_8_Raji_108401to171823_1to108400)	0	59	1653	241	1653	1	59,	1653,
BGLF4	ORF36	chrEBV(B_95_8_Raji_108401to171823_1to108400)	0	59	2926	1637	2926	1	59,	2926,
BGLF3.5	ORF35	chrEBV(B_95_8_Raji_108401to171823_1to108400)	0	59	3429	2805	3266	1	59,	3429,
BGLF3	ORF34	chrEBV(B_95_8_Raji_108401to171823_1to108400)	0	59	4425	3253	4251	1	59,	4425,
BGRF1/BDRF1	ORF29	chrEBV(B_95_8_Raji_108401to171823_1to108400)	1	4250	9664	4250	9663	2	4250,8527,	5185,9664,
BGLF2	ORF33	chrEBV(B_95_8_Raji_108401to171823_1to108400)	0	4791	6241	5175	6185	1	4791,	6241,
BGLF1	ORF32	chrEBV(B_95_8_Raji_108401to171823_1to108400)	0	4791	7744	6163	7686	1	4791,	7744,
BDLF4	ORF31	chrEBV(B_95_8_Raji_108401to171823_1to108400)	0	4791	8366	7656	8333	1	4791,	8366,
BDLF3.5	ORF30	chrEBV(B_95_8_Raji_108401to171823_1to108400)	0	4791	8616	8312	8545	1	4791,	8616,
BDLF3	ORF28	chrEBV(B_95_8_Raji_108401to171823_1to108400)	0	9666	10416	9674	10378	1	9666,	10416,
BDLF2	ORF27	chrEBV(B_95_8_Raji_108401to171823_1to108400)	0	9666	11788	10439	11701	1	9666,	11788,
BDLF1	ORF26	chrEBV(B_95_8_Raji_108401to171823_1to108400)	0	9666	12698	11712	12617	1	9666,	12698,
BcLF1	ORF25	chrEBV(B_95_8_Raji_108401to171823_1to108400)	0	12619	17022	12633	16778	1	12619,	17022,
BcRF1	ORF24	chrEBV(B_95_8_Raji_108401to171823_1to108400)	1	16673	20286	16777	19029	1	16673,	20286,
BTRF1	ORF23	chrEBV(B_95_8_Raji_108401to171823_1to108400)	1	19016	20286	19016	20230	1	19016,	20286,
BXLF2	ORF22	chrEBV(B_95_8_Raji_108401to171823_1to108400)	0	20208	22621	20227	22347	1	20208,	22621,
BXLF1	ORF21	chrEBV(B_95_8_Raji_108401to171823_1to108400)	0	20208	24446	22349	24172	1	20208,	24446,
BXRF1	ORF20	chrEBV(B_95_8_Raji_108401to171823_1to108400)	1	24171	26486	24171	24917	1	24171,	26486,
BVRF1	ORF19	chrEBV(B_95_8_Raji_108401to171823_1to108400)	1	24613	26486	24727	26439	1	24613,	26486,
BVLF1	ORF18	chrEBV(B_95_8_Raji_108401to171823_1to108400)	0	26232	27227	26409	27227	1	26232,	27227,
BVRF2	ORF17	chrEBV(B_95_8_Raji_108401to171823_1to108400)	1	27032	29055	27238	29055	1	27032,	29055,
BdRF1	ORF17.5	chrEBV(B_95_8_Raji_108401to171823_1to108400)	1	27931	29055	28018	29055	1	27931,	29055,
BILF2	membrane-glycoprotein	chrEBV(B_95_8_Raji_108401to171823_1to108400)	0	29064	29882	29090	29836	1	29064,	29882,
LF3	LF3	chrEBV(B_95_8_Raji_108401to171823_1to108400)	1	32170	35311	32170	34944	1	32170,	35311,
oriLytr	Lytic-origin-of-replication-left	chrEBV(B_95_8_Raji_108401to171823_1to108400)	1	34807	36044	34807	36044	1	34807,	36044,
LF2	ORF11	chrEBV(B_95_8_Raji_108401to171823_1to108400)	0	40625	42017	40635	41924	1	40625,	42017,
LF1	ORF10	chrEBV(B_95_8_Raji_108401to171823_1to108400)	0	40625	43294	41885	43294	1	40625,	43294,
RPMS1	RPMS1	chrEBV(B_95_8_Raji_108401to171823_1to108400)	1	29952	52131	41923	47152	7	29952,41181,41523,41837,46867,48446,50225,	30080,41312,41677,41948,48337,48528,52131,
BILF1	G-protein coupled receptor	chrEBV(B_95_8_Raji_108401to171823_1to108400)	0	40625	44241	43303	44241	1	40625,	44241,
BALF5	ORF9	chrEBV(B_95_8_Raji_108401to171823_1to108400)	0	42972	47888	44841	47888	1	42972,	47888,
BALF4	ORF8	chrEBV(B_95_8_Raji_108401to171823_1to108400)	0	47844	50512	47891	50464	1	47844,	50512,
A73	A73	chrEBV(B_95_8_Raji_108401to171823_1to108400)	1	47149	52131	48252	51465	4	47149,48446,50225,51381,	48337,48528,50351,52131,
BALF3	ORF7	chrEBV(B_95_8_Raji_108401to171823_1to108400)	0	47844	52508	50451	52508	1	47844,	52508,
BARF0	BARF0	chrEBV(B_95_8_Raji_108401to171823_1to108400)	1	50721	52136	50721	52136	1	50721,	52136,
BALF2	ORF6	chrEBV(B_95_8_Raji_108401to171823_1to108400)	0	52150	55956	52526	55912	1	52150,	55956,
BALF1	vbcl-2b	chrEBV(B_95_8_Raji_108401to171823_1to108400)	0	55988	56584	55997	56545	1	55988,	56584,
BARF1	BARF1	chrEBV(B_95_8_Raji_108401to171823_1to108400)	1	56608	57312	56646	57311	1	56608,	57312,
BNLF2b	BNLF2a	chrEBV(B_95_8_Raji_108401to171823_1to108400)	0	58083	58436	58140	58436	1	58083,	58436,
BNLF2a	BNLF2a	chrEBV(B_95_8_Raji_108401to171823_1to108400)	0	58083	58667	58446	58628	1	58083,	58667,
LMP-1	LMP1	chrEBV(B_95_8_Raji_108401to171823_1to108400)	0	58083	60656	59302	60616	3	58083,60184,60349,	60107,60270,60656,
BNRF1	ORF75	chrEBV(B_95_8_Raji_108401to171823_1to108400)	1	65114	69279	65159	69115	1	65114,	69115,
EBER-1	Non-coding	chrEBV(B_95_8_Raji_108401to171823_1to108400)	1	70052	70218	70052	70218	1	70052,	70218,
EBER-2	Non-coding	chrEBV(B_95_8_Raji_108401to171823_1to108400)	1	70379	70551	70379	70551	1	70379,	70551,
oriP	Latency-origin-of-replication	chrEBV(B_95_8_Raji_108401to171823_1to108400)	1	70738	72735	70738	72735	1	70738,	72735,
BCRF1	vIL-10	chrEBV(B_95_8_Raji_108401to171823_1to108400)	1	73054	73685	73098	73610	1	73054,	73685,
EBNA-LP	latency-protein	chrEBV(B_95_8_Raji_108401to171823_1to108400)	1	77807	101167	77832	99117	19	77807,77982,78124,81049,81196,84121,84268,87193,87340,90265,90412,93337,93484,96409,96556,98896,99013,99521,100987,	77833,78042,78255,81114,81327,84186,84399,87258,87471,90330,90543,93402,93615,96474,96687,98928,99124,99579,10167,
EBNA-2	latency-protein	chrEBV(B_95_8_Raji_108401to171823_1to108400)	1	74759	101167	99639	101102	1	74759,75049,77982,78124,81049,81196,84121,84268,87193,87340,90265,90412,93337,93484,96409,96556,98896,99013,99521,	74902,75080,78042,78255,81114,81327,84186,84399,87258,87471,90330,90543,93402,93615,96474,96687,98928,99134,101167,
BHLF1	BHLF1	chrEBV(B_95_8_Raji_108401to171823_1to108400)	0	101437	103952	101710	103692	1	101437,	103952,
oriLyt	Lytic-origin-of-replication-left	chrEBV(B_95_8_Raji_108401to171823_1to108400)	1	103724	104716	103724	104716	1	103724,	104716,
BHRF1	gb|ABB89223.1|	chrEBV(B_95_8_Raji_108401to171823_1to108400)	1	104894	106674	105511	106086	1	104894,	106674,
BFLF2	ORF69	chrEBV(B_95_8_Raji_108401to171823_1to108400)	0	107114	108216	107114	108070	1	107114,	108216,
BFLF1	ORF68	chrEBV(B_95_8_Raji_108401to171823_1to108400)	0	107114	109703	108083	109660	1	107114,	109703,
BFRF1A	ORF67A	chrEBV(B_95_8_Raji_108401to171823_1to108400)	1	109659	113209	109659	110066	1	109659,	113209,
BFRF1	ORF67	chrEBV(B_95_8_Raji_108401to171823_1to108400)	1	109967	113209	110026	111036	1	109967,	113209,
BFRF2	ORF66	chrEBV(B_95_8_Raji_108401to171823_1to108400)	1	110943	113209	110943	112718	1	110943,	113209,
BFRF3	ORF65	chrEBV(B_95_8_Raji_108401to171823_1to108400)	1	112642	113209	112642	113172	1	112642,	113209,
BPLF1	ORF64	chrEBV(B_95_8_Raji_108401to171823_1to108400)	0	113198	123327	113213	122662	1	113198,	123327,
BOLF1	ORF63	chrEBV(B_95_8_Raji_108401to171823_1to108400)	0	113198	126457	122655	126374	1	113198,	126457,
BORF1	ORF62	chrEBV(B_95_8_Raji_108401to171823_1to108400)	1	126152	130023	126373	127467	1	126152,	130023,
BORF2	ORF61	chrEBV(B_95_8_Raji_108401to171823_1to108400)	1	127304	130023	127542	130022	1	127304,	130023,
BaRF1	ORF60	chrEBV(B_95_8_Raji_108401to171823_1to108400)	1	129939	133339	130035	130943	1	129939,	133339,
BMRF1	ORF59	chrEBV(B_95_8_Raji_108401to171823_1to108400)	1	130975	133339	131034	132248	1	130975,	133339,
BMRF2	ORF58	chrEBV(B_95_8_Raji_108401to171823_1to108400)	1	131914	133339	132253	133326	1	131914,	133339,
BSLF2/BMLF1	ORF57	chrEBV(B_95_8_Raji_108401to171823_1to108400)	0	133877	135491	133878	135423	2	133877,135363,	135256,135491,
BSLF1	ORF56	chrEBV(B_95_8_Raji_108401to171823_1to108400)	0	133877	138016	135392	138016	1	133877,	138016,
BSRF1	ORF55	chrEBV(B_95_8_Raji_108401to171823_1to108400)	1	138017	138739	138059	138715	1	138017,	138739,
BLLF3	ORF54	chrEBV(B_95_8_Raji_108401to171823_1to108400)	0	138743	139654	138773	139609	1	138743,	139654,
BLRF1	ORF53	chrEBV(B_95_8_Raji_108401to171823_1to108400)	1	139642	140552	139682	139990	1	139642,	140552,
BLRF2	ORF52	chrEBV(B_95_8_Raji_108401to171823_1to108400)	1	139998	140552	140060	140548	1	139998,	140552,
BLLF1	ORF51	chrEBV(B_95_8_Raji_108401to171823_1to108400)	0	140555	143327	140565	143288	1	140555,	143327,
BLLF2	BLLF2	chrEBV(B_95_8_Raji_108401to171823_1to108400)	0	140555	141186	140702	141148	1	140555,	141186,
EBNA-3A	latency-protein	chrEBV(B_95_8_Raji_108401to171823_1to108400)	1	74759	146385	143378	146300	21	74759,75049,77977,78124,81049,81196,84121,84268,87193,87340,90265,90412,93337,93484,96409,96556,98895,99013,118613,143373,143805,	74902,75080,78042,78255,81114,81327,84186,84399,87258,87471,90330,90543,93402,93615,96474,96687,98928,99134,118784,143716,146385,
EBNA-3B	latency-protein	chrEBV(B_95_8_Raji_108401to171823_1to108400)	1	74759	152905	146488	149382	21	74759,75049,77977,78124,81049,81196,84121,84268,87193,87340,90265,90412,93337,93484,96409,96556,98895,99013,118613,146443,146923,	74902,75080,78042,78255,81114,81327,84186,84399,87258,87471,90330,90543,93402,93615,96474,96687,98928,99134,118784,146844,152905,
EBNA-3C	latency-protein	chrEBV(B_95_8_Raji_108401to171823_1to108400)	1	74759	152905	149506	152558	21	74759,75049,77977,78124,81049,81196,84121,84268,87193,87340,90265,90412,93337,93484,96409,96556,98895,99013,118613,149499,149940,	74902,75080,78042,78255,81114,81327,84186,84399,87258,87471,90330,90543,93402,93615,96474,96687,98928,99134,118784,149865,152905,
BZLF2	envelope-glycoprotein-gp42	chrEBV(B_95_8_Raji_108401to171823_1to108400)	0	152580	153251	152580	153251	1	152580,	153251,
BZLF1	Zta	chrEBV(B_95_8_Raji_108401to171823_1to108400)	0	153261	154329	153345	154290	3	153261,153561,153790,	153476,153665,154329,
BRLF1	Rta	chrEBV(B_95_8_Raji_108401to171823_1to108400)	0	153261	157316	154501	156318	3	153261,153561,153790,	153476,153665,156320,
BRRF1	ORF49	chrEBV(B_95_8_Raji_108401to171823_1to108400)	1	156151	157250	156317	157249	1	156151,	157250,
BRRF2	ORF48	chrEBV(B_95_8_Raji_108401to171823_1to108400)	1	157378	159054	157437	159050	1	157378,	159054,
EBNA-1.2:EBNA-1-latency-I	EBNA-1.2-QUK	chrEBV(B_95_8_Raji_108401to171823_1to108400)	1	113557	161077,	159085	161010	3	113557,118613,159077,	113593,118784,161077,
BKRF2	ORF47	chrEBV(B_95_8_Raji_108401to171823_1to108400)	1	161040	162927	161093	161506	1	161040,	162927,
BKRF3	ORF46	chrEBV(B_95_8_Raji_108401to171823_1to108400)	1	161488	162927	161488	162255	1	161488,	162927,
BKRF4	ORF45	chrEBV(B_95_8_Raji_108401to171823_1to108400)	1	162269	162927	162269	162922	1	162269,	162927,
BBLF4	ORF44	chrEBV(B_95_8_Raji_108401to171823_1to108400)	0	162960	165394	162965	165394	1	162960,	165394,
BBRF1	ORF43	chrEBV(B_95_8_Raji_108401to171823_1to108400)	1	165011	167925	165339	167180	1	165011,	167925,
BBRF2	ORF42	chrEBV(B_95_8_Raji_108401to171823_1to108400)	1	167083	167925	167083	167919	1	167083,	167925,
BBLF2/BBLF3	ORF40	chrEBV(B_95_8_Raji_108401to171823_1to108400)	0	167826	170173	167916	170173	2	167826,168650,	168521,170173,
BBRF3	ORF49	chrEBV(B_95_8_Raji_108401to171823_1to108400)	1	170116	171498	170272	171489	1	170116,	171498,