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Accessory files for RNA-seq based EBV transcriptome analysis:
Lin, Z, Xu, G, Deng, N, Taylor, C, Zhu, D, Flemington, EK. Quantitative and qualitative RNA-seq based evaluation of Epstein-Barr virus transcription in type I latency Burkitt’s lymphoma cells. J. Virol. 2010; 84:13053-13058 (PMID:20943983).
Concha, M, Wang, X, Cao, S, Baddoo, M, Fewell, C, Lin, Z, Hulme, W, Hedges, D, McBride, J, Flemington, EK. Identification of new viral genes and transcript isoforms during Epstein-Barr virus reactivation using RNA-seq. J Virol. 2011 Nov 16. (PMID:22090128). [Epub ahead of print]
NOTE: Sequencing of Akata and Mutu genomes in progress. Will be posted here when finished.
Alignment Files
EBV Type 1 Strain
Uninverted
Inverted
chrEBV (B95-8_Raji)_inverted.fa
EBV Type 2 Strain
EBV Bowtie Index Files
EBV Type 1 Strain
Uninverted
Inverted
EBV_B_95_8_Raji_inverted.1.ebwt
EBV_B_95_8_Raji_inverted.2.ebwt
EBV_B_95_8_Raji_inverted.3.ebwt
EBV_B_95_8_Raji_inverted.4.ebwt
EBV_B_95_8_Raji_inverted.rev.1.ebwt
EBV_B_95_8_Raji_inverted.rev.2.ebwt
EBV Type 2 Strain
EBV Genome Viewer Files
EBV Type 1 Strain
Uninverted
Inverted
chrEBV (B95-8_Raji)_inverted.fa
chrEBV (B95-8_Raji)_inverted_V3
EBV Type 2 Strain
EBV SAMMate Annotation Files
EBV Type 1 Strain
Uninverted
Inverted
chrEBV (B95-8_Raji)_inverted.ann
EBV Type 2 Strain
2009_origin_plusMito_plusEBV_no_features.ann